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ESD/EVF Methods in HyPhy (Read 1017 times)
Dylan Storey
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ESD/EVF Methods in HyPhy
Nov 13th, 2012 at 8:20pm
 
I'm probably just not seeing it, but are these methods explicitly implemented in HyPhy?

If so , what bf do I need to be using in order use them?

If not , anyone have a resource that might help a scrub get started on the analysis ?
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Sergei
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Re: ESD/EVF Methods in HyPhy
Reply #1 - Nov 14th, 2012 at 10:39am
 
Hi Dylan,

There is a standard analysis to fit the general bivariate model to an individual data set (see screenshot); this estimate forms the basis of ESD.
If you run the corresponding processor file, it will generate a postscript file with the evolutionary fingerprint estimate.

I never put the ESD calculation scripts into the HyPhy distribution: they exist as standalone files. Do you want me to dig them up and send you the files?

Sergei

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Dylan Storey
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Re: ESD/EVF Methods in HyPhy
Reply #2 - Nov 19th, 2012 at 12:49pm
 
If it wouldn't be too much trouble I'd greatly appreciate you digging up the old scripts. 
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