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Error in ancestral reconstruction (Read 1554 times)
Catherine Macken
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Curious HyPhy user

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Error in ancestral reconstruction
Feb 7th, 2013 at 11:09am
 
I am using SLAC, and analyzing tips separately from internal branches with an HKY model of evolution.  My dataset contains 1849 species and 1701 distinct sites.  I get the error in the attachment in phase 4 of the analysis. What am I doing wrong?
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Sergei
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Datamonkeys are forever...

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Re: Error in ancestral reconstruction
Reply #1 - Feb 8th, 2013 at 9:56am
 
Hi Catherine,

Which version of HyPhy are you using? I thought I had fixed this bug -- which options in SLAC did you select?

Sergei
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Division of Biomedical Informatics
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University of California San Diego
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Catherine Macken
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Curious HyPhy user

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Re: Error in ancestral reconstruction
Reply #2 - Feb 11th, 2013 at 9:57am
 
Hi Sergei:

I am using version 2.1120120618beta(MP) for Mac OS X.

SLAC options: HKY model of evolution; est dN/dS only.

Catherine
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