Welcome, Guest. Please Login
 YaBB - Yet another Bulletin Board
 
 
  HomeHelpSearchLogin  
 
  HyPhy message board › HYPHY Package › HyPhy bugs › Error in ancestral reconstruction
(Moderators: Sergei, Simon)
‹ Previous Topic | Next Topic ›
Page Index Toggle Pages: 1
Error in ancestral reconstruction (Read 2545 times)
Catherine Macken
YaBB Newbies
*
Offline


Curious HyPhy user

Posts: 9
Error in ancestral reconstruction
Feb 7th, 2013 at 11:09am  
I am using SLAC, and analyzing tips separately from internal branches with an HKY model of evolution.  My dataset contains 1849 species and 1701 distinct sites.  I get the error in the attachment in phase 4 of the analysis. What am I doing wrong?
Back to top
 
 
IP Logged
 
Sergei
YaBB Administrator
*****
Offline


Datamonkeys are forever...

Posts: 1658
UCSD
Gender: male
Re: Error in ancestral reconstruction
Reply #1 - Feb 8th, 2013 at 9:56am  
Hi Catherine,

Which version of HyPhy are you using? I thought I had fixed this bug -- which options in SLAC did you select?

Sergei
Back to top
 
Associate Professor
Division of Infectious Diseases
Division of Biomedical Informatics
School of Medicine
University of California San Diego
WWW WWW  
IP Logged
 
Catherine Macken
YaBB Newbies
*
Offline


Curious HyPhy user

Posts: 9
Re: Error in ancestral reconstruction
Reply #2 - Feb 11th, 2013 at 9:57am  
Hi Sergei:

I am using version 2.1120120618beta(MP) for Mac OS X.

SLAC options: HKY model of evolution; est dN/dS only.

Catherine
Back to top
 
 
IP Logged
 
Page Index Toggle Pages: 1
‹ Previous Topic | Next Topic ›
 
  « Home ‹ Board Top of this page

HyPhy message board » Powered by YaBB 2.5.2!
YaBB Forum Software © 2000-2024. All Rights Reserved.

Valid RSS Valid XHTML Valid CSS Powered by Perl Source Forge