HyPhy Documentation
: GUI Examples and How-tos
Simple MLE Analysis
Simple Hypothesis Testing
More Hypothesis Testing
Tree Reconstruction and Display
How to define a model
Testing non-nested hypotheses
Mixed data/model topology reconstruction.
Comparing selective pressures among fixed partitions of sites.
Editing Trees
Viewing Trees
Sergei L. Kosakovsky Pond, Simon D.W. Frost and Spencer V. Muse, 1997-2004