Batch Files in Examples and other Batch Files. There are two ways to tell Hy-Phy to run a specific batch file: 1. Pass the name/path to the file as a command line argument. For example, if current working directory is /home/joeuser/, and you wish to run the file /home/joeuser/BatchFiles/joes.bf the command to execute would be: HYPHYKernel BatchFiles/joes.bf or HYPHYKernel /home/joeuser/BatchFiles/joes.bf. 2. Start Hy-Phy and when prompted to select a standard analysis, press Enter to skip the selection. A prompt Process Bath File: should appear, and you can direct Hy-Phy to execute a particular batch file by giving a relative or absolute path to the file, as in the example above.
Sergei L. Kosakovsky Pond and Spencer V. Muse, 1997-2002