|
Note:This
table is identical to PHYLIP's translation table.
|
Character |
Translation |
| A |
Alanine (Ala) |
| C |
Cysteine (Cys) |
| D |
Aspartic Acid (Asp) |
| E |
Glutamin Acid (Glu) |
| F |
Phenylalanine (Phe) |
| G |
Glycine (Gly) |
| H |
Histidine (His) |
| I |
Isoleucine (Ile) |
| K |
Lysine (Lys) |
| L |
Leucine (Leu) |
| M |
Methionine (Met) |
| N |
Asparagine (Asn) |
| P |
Proline (Pro) |
| Q |
Glutamine (Gln) |
| R |
Arginine (Arg) |
| S |
Serine (Ser) |
| T |
Threonine (Thr) |
| V |
Valine (Val) |
| W |
Tryptophan (Trp) |
| Y |
Tyrosine (Tyr) |
| B |
D or N (Asn or Asp) |
| Z |
E or Q (Gln or Glu) |
| X,? |
Unknown amino acid (any of the 20) |
| - |
Skipped or unknown (see
Deletions and Ambiguities) |
| . |
For sequential file formats is interpreted
as '?'. For interleaved formats singnals that '.' should be replaced
with the character at the same position in the first sequence. |
HYPHY
provides means for defining custom alphabets and translations.
In particular, HYPHY recognizes relevant NEXUS blocks.
However one must be careful with custom alphabets since they
may require model redefinitions.
|
