Stand Alone Analyses#
In addition to the standard analyses that ship with HyPhy, other stand alone analyses are available here.
These analyses include:#
- Ancestral Sequence Reconstruction
- Standard MG94 Fit
- Fit Multiple Hit Models
- Codon Models with Multiple Classes of Synonymous Codons
- Simulate Codon Data with MG94 Models
- Codon-aware MSA
- And new analyses regularly added. check the github repository for the latest.