hi there,

i can't compile the mpi version on a computer with 8-cores. any comments or helps are appreciated informations follow -

[root@pcii HYPHY_MPI]# uname -a
Linux pcii.ioz.ac.cn 2.6.9-55.0.12.ELsmp #1 SMP Fri Nov 2 12:38:56 EDT 2007 x86_64 x86_64 x86_64 GNU/Linux

[root@pcii HYPHY_MPI]# ./gtk_build.sh MPI
Linux
Checking for curl
./gtk_build.sh: line 31: mpicc++: command not found
Curl seems to be absent (setting up compiler options skip CURL code)
+-----------------------------------------------------------+
|Building a single-threaded HYPHYKernelMPI for MPI          |
+-----------------------------------------------------------+
COMPILER=mpicc++, gcc
COMPILER_FLAGS= -w -c -O3 -fsigned-char -fpermissive -I/home/members/Desktop/hyphy/HYPHY_MPI/GUI -I/home/members/Desktop/hyphy/HYPHY_MPI/Source -I/home/members/Desktop/hyphy/HYPHY_MPI/Source/SQLite -DXTHREADS -D_REENTRANT -DXUSE_MTSAFE_API -I/usr/include/gtk-2.0 -I/usr/lib64/gtk-2.0/include -I/usr/X11R6/include -I/usr/include/atk-1.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/freetype2/config -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include    -D GDK_PIXBUF_ENABLE_BACKEND -D SQLITE_PTR_SIZE=sizeof(long) -D __HYPHY_GTK__  -D__HYPHY_NO_CURL__ -D __HYPHYMPI__
Building baseobj.cpp
./gtk_build.sh: line 158: mpicc++: command not found
Error during compilation
[root@pcii HYPHY_MPI]# locate mpicc++
warning: locate: could not open database: /var/lib/slocate/slocate.db: No such file or directory
warning: You need to run the 'updatedb' command (as root) to create the database.
Please have a look at /etc/updatedb.conf to enable the daily cron job.
[root@pcii HYPHY_MPI]# which mpicc
/usr/local/bin/mpicc

I got another problem compiling HYPHY (1.00beta) with mpich2-1.0.6p1:
Code:

daniel@daniel-desktop:~/sources/test/HYPHY_Source$ bash build.sh MPI
Linux
Checking for curl
curl_check.cpp:1:23: error: curl/curl.h: No such file or directory
Curl seems to be absent (setting up compiler options skip CURL code)
+-----------------------------------------------------------+
|Building a single-threaded HYPHYKernelMPI for MPI	    |
+-----------------------------------------------------------+
COMPILER=mpicc, mpicxx
COMPILER_FLAGS= -w -c -fsigned-char -O3 -fpermissive -I/home/daniel/sources/test/HYPHY_Source/Source -I/home/daniel/sources/test/HYPHY_Source/Source/SQLite -D SQLITE_PTR_SIZE=sizeof(char*) -D __UNIX__  -D__HYPHY_NO_CURL__ -D __HYPHYMPI__
Building baseobj.cpp
In file included from /usr/local/include/mpi.h:1110,
		     from batchlan.h:361,
		     from baseobj.cpp:34:
/usr/local/include/mpicxx.h:26:2: error: #error "SEEK_SET is #defined but must not be for the C++ binding of MPI"
/usr/local/include/mpicxx.h:30:2: error: #error "SEEK_CUR is #defined but must not be for the C++ binding of MPI"
/usr/local/include/mpicxx.h:35:2: error: #error "SEEK_END is #defined but must not be for the C++ binding of MPI"
Error during compilation
 

Compiling HYPHY (1.00beta) with mpich-1.2.7p1 I get the following error:
Code:

daniel@daniel-desktop:~/sources/test/HYPHY_Source$ bash build.sh MPI
Linux
Checking for curl
curl_check.cpp:1:23: error: curl/curl.h: No such file or directory
Curl seems to be absent (setting up compiler options skip CURL code)
+-----------------------------------------------------------+
|Building a single-threaded HYPHYKernelMPI for MPI	    |
+-----------------------------------------------------------+
COMPILER=mpiCC, mpicc
COMPILER_FLAGS= -w -c -fsigned-char -O3 -fpermissive -I/home/daniel/sources/test/HYPHY_Source/Source -I/home/daniel/sources/test/HYPHY_Source/Source/SQLite -D SQLITE_PTR_SIZE=sizeof(char*) -D __UNIX__  -D__HYPHY_NO_CURL__ -D __HYPHYMPI__
Building baseobj.cpp
eval: 1: Syntax error: "(" unexpected
Error during compilation
daniel@daniel-desktop:~/sources/test/HYPHY_Source$
 

How can I compile HYPHY with MPI support?

Thanks,
Daniel

Dear Daniel,

I am glad you worked out the SEEK_xxx quirk and thank you for posting a workaround. I have never come across it before.

Cheers,
Sergei