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inputRedirect error (Read 2066 times)

sunilkalmadi

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Posts: 15

inputRedirect error
Mar 6^th, 2008 at 3:53am

Dear all,
I am trying to Automate choices for HyPhy neighbor joining analysis but i get the following error msg:

Ran out of input in buffer during redirected standard input read

and the the output file doesnt get saved.

My batch file reads:
inputRedirect = {};
inputRedirect["01"]="Distance formulae";
inputRedirect["02"]="Nucleotide/Protein";
inputRedirect["03"]="";
inputRedirect["04"]="Force Zero";
inputRedirect["05"]="p_Distance_aa";
inputRedirect["06"]="y";
ExecuteAFile (HYPHY_BASE_DIRECTORY + "TemplateBatchFiles"+
DIRECTORY_SEPARATOR+"NeighborJoining.bf", inputRedirect);

how can this be solved? please help

cheers
sunil

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Sergei YaBB Administrator Offline Datamonkeys are forever... Posts: 1658 UCSD Gender:	Re: inputRedirect error Reply #1 - Mar 10^th, 2008 at 9:17am Dear Sunil, You need to tell HyPhy where to write the resulting tree. Add Code: inputRedirect["07"]=""; to have HyPhy prompt for the location or Code: inputRedirect["07"]="actual file path"; to automatically write to the location you specify a priori. Insert this line before you call ExecuteAFile. Cheers, Sergei
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sunilkalmadi YaBB Newbies Offline Feed your monkey! Posts: 15	Re: inputRedirect error Reply #2 - Mar 10^th, 2008 at 11:07am Dear Sergie, Thanks for your help.. it works fine!! regards, Sunil
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