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Script to calculate model-average supports (Read 2001 times)

Tommy

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Script to calculate model-average supports
Mar 15^th, 2008 at 12:45pm

Dear Sergei,

I want to calculate model-average supports from the GARD raw result ran in local machine, may I ask where can I get the script for this purpose? If you have not written this in Hyphy batch, I think .pl (e.g. GARDplot.pl) would be also okay for me.

Please forgive me if I have overlooked some posts which have already mentioned the link for this script.

Thank you!

Best wishes,
Tommy

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Sergei

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Re: Script to calculate model-average supports
Reply #1 - Mar 18^th, 2008 at 11:24pm

Dear Tommy,

Here's the file Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to

Login.
It takes in two arguments from stdin

1). The file with GARD details (_details) file
2). Terminal options for GNUPlot (e.g. png medium picsize 1024 768 or pdf fsize 9)

It outputs the code you can pipe directly into gnuplot.
E.g.

Code:

$(echo gard.out; echo "png medium picsize 1024 768") | ./HYPHYMP gard_postprocessor.bf | /usr/bin/local/gnuplot > out.png

HTH,
Sergei

Associate Professor
Division of Infectious Diseases
Division of Biomedical Informatics
School of Medicine
University of California San Diego

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