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Codon begins at 2 on CVS? GARD *** p-value? (Read 1526 times)

lins1

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Codon begins at 2 on CVS? GARD *** p-value?
Aug 19^th, 2009 at 1:14pm

Just ran some tests on the datamonkey server using the provided sample pol.nex.

Found a couple things perplexing:

(1) FEL: codon numbering begins at 2 on the CVS list. That makes it necessary to shift by 1 to reconcile with main web output or the HTML list.

(2) GARD: the Help stamp for Significance shows identical p-value for ** and ***.

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Sergei YaBB Administrator Offline Datamonkeys are forever... Posts: 1658 UCSD Gender:	Re: Codon begins at 2 on CVS? GARD * p-value? Reply #1 -** Aug 19^th, 2009 at 2:20pm Dear lins1, Thanks for pointing out the bugs. I fixed the two issues that you reported; please let me know if you find others. Sergei
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