Hi everybody,

I'm a bit confused about the automatic model selection. Is there actually anywhere a list, where you can find out what parameters each model string include and which models are the same?
As in another post, I'm a bit puzzled that Model identifies let's say 010232 as the best model, but after entering the parameters in GARD it says at the end of the analysis that it used 10343.
I'm looking for recombination and selection in differenet strains of a virus. When I chose the REV and gamma (idenitified by Modeltest) it found 1 significant breakpoint in GARD and SBP and splitting the sequences and looking at trees in Mega, confirmed at least 2 jumps. However, when using the suggested Model-string or simplot can't detect recombination. So, I would like to have a closer look at the diffrences in the models used.

Thanks!
Marlene

Was just about going to take my question back. Thank you anyway!
And maybe for other users: the code describes how many parameters are used to describe rates in the following order:
a <-> c, a <->g, a <-> t,  c <-> g, c <-> t and g <-> t