HyPhy message board

	Welcome, Guest. Please Login

Home

Help

HyPhy message board › HYPHY Package › HyPhy feedback › Sequences

(Moderators: Sergei, Simon)

‹ Previous Topic | Next Topic ›

Pages: 1

Send Topic

Sequences (Read 1234 times)

scherrer YaBB Newbies Offline Feed your monkey! Posts: 8	Sequences Mar 3^rd, 2010 at 8:53am This may be a really simple question, but I can't figure it out. I am trying to calculate the physical sites rates using HYPHY and I wrote a function to do so. However, the function needs to take the sequence as an argument. Is there any way to access the sequences from the input file as a string? Thanks, Mike
Back to top	IP Logged

Sergei

YaBB Administrator

Offline

Datamonkeys are forever...

Posts: 1658
UCSD
Gender: male

Re: Sequences
Reply #1 - Mar 3^rd, 2010 at 9:50am

Hi Mike,

If you define a datafilter object (dsf in the example below), you can then use the GetDataInfo accessor to retrieve sequences and other attributes of the object.

Code:

for (seqID = 0; seqID < dsf.species; seqID = seqID+1)
{
GetDataInfo(sequence,dsf,seqID); /* stores the sequence at index seqID, 0 - based, into variable 'sequence' */
}

Sergei

Associate Professor
Division of Infectious Diseases
Division of Biomedical Informatics
School of Medicine
University of California San Diego

WWW

IP Logged

Pages: 1

Send Topic

‹ Previous Topic | Next Topic ›

« Home

‹ Board

Top of this page