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Getting started in linux (Read 3643 times)

jos

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Getting started in linux
Aug 3^rd, 2010 at 9:51am

I know it's very rude to ask this but :
I just successfully installed HYPHY, what next ?
Where is the executable to launch ?
Is there a kind of README file or webpage that explains basic usage ?

The "Getting started" pdf file that contains 57 pages didn't really help for a quick start, as it supposes that the program is already running.

(as you guessed from the subject, it's on a linux box that I'm trying to run HYPHY).

Thanks in advance, I hope this question will be easy enough to answer

jos

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Sergei

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Re: Getting started in linux
Reply #1 - Aug 3^rd, 2010 at 10:15am

Hi Jos,

If you downloaded and installed the HyPhy distro, then there should be a directory called hyphy on your machine (this is where the archive was decompressed). If you then were able to run the build.sh scripts, then inside the hyphy directory you will find the HYPHY directory and inside that directory -- two binary files, called HYPHYMP (command line) and HYPHYMP_GTK (GUI).

If you cd to /path/to/hyphy/HYPHY inside a terminal window, you should simply be able to type $./HYPHYMP or $./HYPHYMP_GTK at the prompt to launch HyPhy.

HTH,
Sergei

Associate Professor
Division of Infectious Diseases
Division of Biomedical Informatics
School of Medicine
University of California San Diego

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jos YaBB Newbies Offline Feed your monkey! Posts: 3	Re: Getting started in linux Reply #2 - Aug 3^rd, 2010 at 11:36am OK, thanks, you're quick ! I tried that, but it needs a batch file or something (I'm in Europe, so at home now, no access to the computer I installed HYPHY on). Is there an example file available ? Should I give command line arguments ? Thanks, jos
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Sergei YaBB Administrator Offline Datamonkeys are forever... Posts: 1658 UCSD Gender:	Re: Getting started in linux Reply #3 - Aug 3^rd, 2010 at 8:16pm Hi jos, If you start hyphy without any arguments from it's install directory, you should see a menu of standard analyses in the command line version, or a graphical console in the gtk version. Sergei
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jos YaBB Newbies Offline Feed your monkey! Posts: 3	Re: Getting started in linux Reply #4 - Aug 4^th, 2010 at 12:40am OK, found it ... the important part is to launch hyphy from the directory where it resides. Thanks for getting me started ! jos
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Sergei YaBB Administrator Offline Datamonkeys are forever... Posts: 1658 UCSD Gender:	Re: Getting started in linux Reply #5 - Aug 4^th, 2010 at 11:16am Hi jos, No worries. You can also start HyPhy from any directory and provide the location of the installation files as a command line argument, e.g. Code: $HYPHYMP BASEPATH=/path/to/hyphy/HYPHY Sergei
Back to top	Associate Professor Division of Infectious Diseases Division of Biomedical Informatics School of Medicine University of California San Diego WWW IP Logged

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