Hi

On running a GARD analysis, I get an error:

Bad Binary Operator Placement:+?siteDifferenceCount

which crashes the analysis very early on (it definitely starts and accepts the commands I give it). I found a wiki entry about something similar: hyphywiki/index.php/Trouble:Bad_Binary_Operator_Placement
but it doesn't seem to be exactly the same issue and there doesn't seem to be a solution . .

Has anyone solved something similar?

Thanks.

David

Thanks Sergei

That is almost certainly the case. I shall send a request to my cluster administrator.

David

Part of the problem was that I was getting the source code with:

svn co XXXXXXXdatam0nk3y.org/svn/hyphy  (!) (censored with XXX so I can post the link)

It seems this could be obsolete now (2.00xxx) but will still give out source code if asked.

The other problem was that I was feeding it the wrong file   

The latest github code (2.1020111129beta(MP) for Linux on x86_64) seems to be working.

. . . actually, this time GARDProcessor.bf fitted a single-tree, multiple partition model, printed 30 trees to the screen but then quit with:

Fitting a mutilple tree, multiple partition model
Error:
Unbalanced Parentheses in Expression:]?

Function call stack
1 : Build Tree tree_1 from string ]
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2 : ExecuteCommands in string "Tree tree_"+pccounter+" = "+partLines[pccounter*2+3]+";" using basepath /home/play/Work/Apps/hyphy/lib/hyphy/TemplateBatchFiles/.
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