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Error while using singlebreakpoint.bf (Read 4099 times)
RTuteja
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Error while using singlebreakpoint.bf
Nov 3rd, 2012 at 1:30pm
 
Hey everyone,

I just got an error while using singlebreakpoint.bf. I uploaded my nucl alignments in fasta format. When I save the results I got the following error (example file worked fine for me). Can someone help where I am making mistake Sad

An error occurred:
Node names should begin with a letter, a number, or an underscore. Had:ma_16g,P_vu_1011439)),lja_24.?10.),(C_ca_37132,((G_ma_07g1942, Current operation/job has been terminated.
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RTuteja
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Curious HyPhy user

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Re: Error while using singlebreakpoint.bf
Reply #1 - Nov 5th, 2012 at 3:18am
 
I got this error. My file had one sequence with alternative splice variant, i.e. sequence name ends with .1 (XXX.1). When I removed the .1 everything seems to be working fine.

Regards,
Reetu
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Sergei
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Re: Error while using singlebreakpoint.bf
Reply #2 - Nov 5th, 2012 at 3:32pm
 
Hi Reetu,

Please take a look at how to prepare data for analysis with HyPhy/Datamonkey: section 2.3.2 of Multimedia File Viewing and Clickable Links are available for Registered Members only!!  You need to Login Login and Multimedia File Viewing and Clickable Links are available for Registered Members only!!  You need to Login Login
The issue about sequence naming is specifically mentioned there.

Sergei
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