Welcome, Guest. Please Login
YaBB - Yet another Bulletin Board
 
  HomeHelpSearchLogin  
 
Problem with BSR ? (Read 2200 times)
DoCo
YaBB Newbies
*
Offline


Curious HyPhy user

Posts: 5
Problem with BSR ?
Dec 13th, 2012 at 11:55pm
 
Hi,
A few weeks ago, I performed a BSR analysis (18 sequences with 164 sites) and I found 6 branches under episodic diversifying selection. This was consistent with MEME analysis which found 18 sites with evidence of episodic diversifying selection. More recently, I performed the same analysis with some rearrangements of the data (more or less sequences, more sites) but BSR found no branches under episodic diversifying selection. Intrigued, I performed again the first analysis and this time BSR found no branches under episodic diversifying selection. So I wondered if there is a problem with BSR recently ?
Thanks !
Dominique
Back to top
 
 
IP Logged
 
DoCo
YaBB Newbies
*
Offline


Curious HyPhy user

Posts: 5
Re: Problem with BSR ?
Reply #1 - Dec 19th, 2012 at 8:15am
 
Hi again,
I performed the same BSR analysis on my computer and I found 6 branches under episodic diversifying selection as in my first datamonkey analysis. So I tried again to run the analysis on datamonkey, but still no branches under selection were found. So it looks like there is a problem with BSR on the server ?
Dominique
Back to top
 
 
IP Logged
 
Sergei
YaBB Administrator
*****
Offline


Datamonkeys are forever...

Posts: 1658
UCSD
Gender: male
Re: Problem with BSR ?
Reply #2 - Dec 20th, 2012 at 9:52am
 
Hi Dominique,

Can you send me the ID of your Datamonkey analysis (upload.1.xxxx)?

Sergei
Back to top
 

Associate Professor
Division of Infectious Diseases
Division of Biomedical Informatics
School of Medicine
University of California San Diego
WWW WWW  
IP Logged
 
DoCo
YaBB Newbies
*
Offline


Curious HyPhy user

Posts: 5
Re: Problem with BSR ?
Reply #3 - Dec 21st, 2012 at 1:46am
 
Here it is :

upload.401653254926086.1
Back to top
 
 
IP Logged