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What method should undertake for pseodugene (Read 1147 times)
shenbinecnu
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Curious HyPhy user

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What method should undertake for pseodugene
Mar 25th, 2013 at 1:38am
 
Hi, there,

I am a new guy for molecular evolutionary study. I am now studying a gene which have became pseudogene in some lineages but still functional in other lineages. Here, I want to estimate the evolutionary rate variation between species or lineages contain pseudogene and species or lineages contain functional gene. I expected that the evolutionary rates for species or lineages with pseudogene should greater than species or lineages with functional gene, since relaxed constraint. Thus, what method should I take to carry on such analyses in HyPhy packages?

Best,

Bin Smiley
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