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Write a sequence data to file (Read 1131 times)
hyphyInfant
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Write a sequence data to file
Apr 15th, 2014 at 11:43am
 
Hi,

     I am simulating codon sequence data and I will, for example, like to be able to confirm what the simulated data look like by being able to write and save it as a ".txt" file, say. Hence, should I wish to use the data any other time I could simply call it using the "ReadDataFile" command. I tried using "fprintf" and I only got a summary containing the number of sites, species, distinct sites, etc. Any assistance will be appreciated.

hyphyInfant,
Thanks in advance.
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Sergei
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Re: Write a sequence data to file
Reply #1 - Apr 16th, 2014 at 4:14pm
 
Hi there,

Code:
DATA_FILE_PRINT_FORMAT = VALUE; //optional
fprintf (PATH_TO_FILE, myFilter); 


where 'myFilter' is DataSetFilter (not a DataSet). The values for the format (default is NEXUS) environment variable are given here. Multimedia File Viewing and Clickable Links are available for Registered Members only!!  You need to Login Login.

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hyphyInfant
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Re: Write a sequence data to file
Reply #2 - Apr 16th, 2014 at 10:30pm
 
Hello Sergei,

   Many thanks for your timely and well detailed response.

hyphyInfant.
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