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scale the tree on syn or nonsyn via script (Read 349 times)
Antonio
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scale the tree on syn or nonsyn via script
Nov 9th, 2005 at 10:57am
 
Hi,
I am reproducing an analysis fo codon models as in Kosakovsky et al (2005, Statistical Methods in Molecular Evolution). I just using a MG94 local model. My question is: Once I get the likelihood and the tree I wonder how to scale the tree to synonymous or non-synonymous views via scripting? because I want to get saved separately both tree-views, is that possible? I thought in pstreestring but I dont' know what parameter give to this function.

By the way I am enjoying with this wonderful soft.

,
antonio
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Sergei
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Datamonkeys are forever...

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Re:  scale the tree on syn or nonsyn via scri
Reply #1 - Nov 10th, 2005 at 3:09am
 
Dear Antonio,

Several other people asked me similar questions, and I am preparing some code to address the issue; should be avialable in a day or two.

Cheers,
Sergei
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