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genetic codon table (Read 3068 times)
maha
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genetic codon table
Jul 24th, 2006 at 3:46am
 
Hallo,

first of all, congratulations for this nice package.

Im trying to run the program, however, I always stop at the codon-table: There is no table for standart genetic code  Sad.
( Im working with nuclear insect coding sequences )
Could you help me somehow  ?

Thanks a lot for your help.
Martin
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Sergei
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Re: genetic codon table
Reply #1 - Jul 24th, 2006 at 8:58am
 
Dear Martin,

The first codon table (Universal Genetic Code) is the one you want.

Cheers,
Sergei
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Re: genetic codon table
Reply #2 - Jul 24th, 2006 at 9:37am
 
Dear Sergej,

thanks for the fast response, .. however, in the HYPHY-Win32. - version there are 12 genetic codes ( 8 of them are mtDNA, the rest are Yeast, Blepharisma, Euploid and Ciliate ) but nothing similiar to Universial ... 

any idea ?
Thanks
Martin
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Re: genetic codon table
Reply #3 - Jul 24th, 2006 at 10:01am
 
Dear Martin,

This is very odd. The Universal table should be first on the list. Are you going through the graphical data panel interface or standard analyses?

Cheers,
Sergei
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Division of Biomedical Informatics
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Re: genetic codon table
Reply #4 - Jul 24th, 2006 at 10:27am
 
ohh... sorry.. I just had overseen the first line...

of course now I see it !

blindness in front of the computer ..

( I maybe was confused, because after extracting the zip-file and looking into folder I didnt saw the universial-file... )

Again, sorry and thanks !!
cheers, Martin
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Sergei
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Re: genetic codon table
Reply #5 - Jul 24th, 2006 at 10:34am
 
Dear Martin,

I am glad it's there:) The Universal table is built-in (all others are in separate files, extensible by the user).

Cheers,
Sergei
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Associate Professor
Division of Infectious Diseases
Division of Biomedical Informatics
School of Medicine
University of California San Diego
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