Hi, I've got a task that should be simple, but I can't find the correct way to script it.  I'd like to iterate through gene comparisons, and I wrote the following portion of script to demonstrate my problem.


genes = {};  /* an array listing all genes in the analysis */
genes [0] = "gene1";
genes [1] = "gene2";
genes [2] = "gene3";
   n = 2;  /* Scalar of the array. */
fprintf(stdout,"Gene List:",genes,"\n");

fprintf(stdout,"The following comparisons will be made:\n");
for(i=0;i<=n;i=i+1) {
     for(j=i+1;j<=n;j=j+1) {
           fprintf (stdout,genes[i]," versus ",genes[j],"\n");
     }
}


The script should list all genes in the array and then print all comparisons between them. However, it gives me the following output:


Gene List:_hyphyAssociativeArray={};
_hyphyAssociativeArray["0"] = "gene1";
_hyphyAssociativeArray["1"] = "gene2";
_hyphyAssociativeArray["2"] = "gene3";

The following comparisons will be made:
1          0          0         
2          0          0         
3          0          0         


I apologize if this is something basic, but I've struggled with it for a while. (I'm running HYPHY in the Terminal on a MacBook with Intel Core Duo processor).
Thanks for your help,
-Nathan

Sergei,
I've downloaded the newest Source and am now running:
        /HYPHY 1.0020080414beta for Darwin on i386\   

It seems to have worked. Many thanks for your help!
-Nathan