Hi

I am trying to install HyPhy on Ubuntu 9.04.

Some background:

0 root@muizenberg:/usr/local/src/hyphy/trunk/Scripts#dpkg -l libcurl4-gnutls-dev libgtk2.0-dev gcc g++
Desired=Unknown/Install/Remove/Purge/Hold
| Status=Not/Inst/Cfg-files/Unpacked/Failed-cfg/Half-inst/trig-aWait/Trig-pend
|/ Err?=(none)/Hold/Reinst-required/X=both-problems (Status,Err: uppercase=bad)
||/ Name                Version             Description
+++-===================-===================-====================================
==================
ii  g++                 4:4.3.3-1ubuntu1    The GNU C++ compiler
ii  gcc                 4:4.3.3-1ubuntu1    The GNU C compiler
ii  libcurl4-gnutls-dev 7.18.2-8ubuntu4.1   Development files and documentation for libcurl (GnuTL
ii  libgtk2.0-dev       2.16.1-0ubuntu2     Development files for the GTK+ library


This is the result:


0 root@muizenberg:/usr/local/src/hyphy/trunk/Scripts#bash buildFromSVN.sh
cp: cannot stat `trunk/UserAddIns': No such file or directory
Linux
Checking for curl
Curl seems to be present
+-----------------------------------------------------------+
|Building a multi-threaded HYPHYKernelMP with setconcurrency|
+-----------------------------------------------------------+
COMPILER=g++, gcc
COMPILER_FLAGS= -w -c -fsigned-char -O3 -fpermissive -I/usr/local/src/hyphy/HYPHY/Source -I/usr/local/src/hyphy/HYPHY/Source/SQLite -D INTPTR_TYPE=long -D __UNIX__  -D _SLKP_LFENGINE_REWRITE_  -D __MP__ -D __MP2__ -fopenmp
Building baseobj.cpp
Complete
Building batchlan2.cpp
Complete
Building batchlan.cpp
batchlan.cpp: In member function ‘void _ElementaryCommand::ExecuteCase37(_ExecutionList&)’:
batchlan.cpp:5863: error: ‘sID’ was not declared in this scope
batchlan.cpp:5864: error: ‘class Bgm’ has no member named ‘GetStructure’
batchlan.cpp:5866: error: ‘class Bgm’ has no member named ‘GetNodeOrder’
Error during compilation
Linux
Checking for curl
Curl seems to be present
COMPILER=g++, gcc
COMPILER_FLAGS= -w -c -fsigned-char -O3 -fpermissive -I/usr/local/src/hyphy/HYPHY/Source -I/usr/local/src/hyphy/HYPHY/Source/SQLite -D INTPTR_TYPE=long -D __UNIX__  -D _SLKP_LFENGINE_REWRITE_
Building baseobj.cpp
Complete
Building batchlan2.cpp
Complete
Building batchlan.cpp
batchlan.cpp: In member function ‘void _ElementaryCommand::ExecuteCase37(_ExecutionList&)’:
batchlan.cpp:5863: error: ‘sID’ was not declared in this scope
batchlan.cpp:5864: error: ‘class Bgm’ has no member named ‘GetStructure’
batchlan.cpp:5866: error: ‘class Bgm’ has no member named ‘GetNodeOrder’
Error during compilation
Linux
Checking for curl
Curl seems to be present
+-----------------------------------------------------------+
|Building a multi-threaded HYPHYKernelMP with setconcurrency|
+-----------------------------------------------------------+
COMPILER=g++, gcc
COMPILER_FLAGS= -w -c -O3 -D INTPTR_TYPE=long -fsigned-char -fpermissive -I/usr/local/src/hyphy/HYPHY/GUI -I/usr/local/src/hyphy/HYPHY/Source -I/usr/local/src/hyphy/HYPHY/Source/SQLite -D_REENTRANT -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/pixman-1 -I/usr/include/freetype2 -I/usr/include/directfb -I/usr/include/libpng12 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include    -D GDK_PIXBUF_ENABLE_BACKEND -D __HYPHY_GTK__ -D _SLKP_LFENGINE_REWRITE_  -D __MP__ -D __MP2__ -fopenmp
Building baseobj.cpp
Complete
Building batchlan2.cpp
Complete
Building batchlan.cpp
batchlan.cpp: In member function ‘void _ElementaryCommand::ExecuteCase37(_ExecutionList&)’:
batchlan.cpp:5863: error: ‘sID’ was not declared in this scope
batchlan.cpp:5864: error: ‘class Bgm’ has no member named ‘GetStructure’
batchlan.cpp:5866: error: ‘class Bgm’ has no member named ‘GetNodeOrder’
Error during compilation
1 root@muizenberg:/usr/local/src/hyphy/trunk/Scripts#

Am I missing dependencies?

regards,
Jan

Dear jan,

I corrected the SVN trunk; build scripts should be working now.

Sergei