Hi,

When I run SLAC within QuickSelectionDetection.bf and select "Tips vs Internals" I get the following error:

Invalid Matrix Index [1830][56] in a 61 by 61 matrix.
Call stack
2 : _SITE_OS_COUNTInternals[cd1]
[cd2]=_SITE_OS_COUNTInternals[cd1][cd2]+1
1: ExecuteComands in string "#include \"SGlvL.bf\";"
reading input from Macintosh
HD:Research:Software:HyPhySecond

When I run it over the full tree it seems to work fine. What am I doing wrong?

Also, could you recommend some reasonably appropriate analyses to detect sites under selection on an alignment of drug naive and post drug HIV RT sequences?

Thanks in advance

Hi Sergei,

Thanks for the advice! Let me know when you have fixed that bug. I also get some matrix error when running DEPS, but my computer is currently tied up running something else, so I won't be able to replicate it for a while. Is it perhaps something similar?

Regards,
noob