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dN/dS of regulatory regions (Read 2116 times)

RyanAmes YaBB Newbies Offline Feed your monkey! Posts: 2	dN/dS of regulatory regions Jul 1^st, 2010 at 7:20am Hi I'm looking for a method to infer whether nucleotide positions in the 5' UTR of a set of genes are under positive selection. Is there any way this can be done in HyPhy? Kind regards Ryan
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Sergei

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Re: dN/dS of regulatory regions
Reply #1 - Jul 1^st, 2010 at 8:49am

Hi Ryan,

Olivier Fedrigo and colleagues have developed a test of selection on promoter regions (using nearby introns as neutral markers) in HyPhy.
The paper describing the approach can be found here Multimedia File Viewing and Clickable Links are available for Registered Members only!! You need to

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RyanAmes YaBB Newbies Offline Feed your monkey! Posts: 2	Re: dN/dS of regulatory regions Reply #2 - Jul 1^st, 2010 at 9:07am Thanks for your reply and suggestion. Ryan
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