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Problem running GA branch (Read 2438 times)

prm42

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Problem running GA branch
Jul 29^th, 2010 at 5:08am

Hi All,
I am trying to run GA branch in HyPhy. These are the steps I follow:
1- I open de batch file (ModelSelectorBranchLocal.bf)
2- Choose the Genetic code (Universal).
3- Select the codon file to analyse: Lysozyme.nex (from the example provided).
4-Accept to use the tree in the file.
5-Provide a model (in this case 010010)
And after the preliminary steps 1, 2, and 3, I get the following error message:
Error:Invalid Matrix Index [0][0] in a -2 by 2 matrix.
Current BL Command:sortedScores[0][0]=-crapAIC
Could you please help me with this problem?
Thanks,
prm42

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Sergei YaBB Administrator Offline Datamonkeys are forever... Posts: 1658 UCSD Gender:	Re: Problem running GA branch Reply #1 - Jul 29^th, 2010 at 11:03am Hi prm42, That's an error that occurs when this code is run NOT in an MPI environment. The analysis ASSUMES that it is started as an MPI process with more than 1 processor. I apologize for its being uninformative. Sergei
Back to top	Associate Professor Division of Infectious Diseases Division of Biomedical Informatics School of Medicine University of California San Diego WWW IP Logged

prm42 YaBB Newbies Offline Feed your monkey! Posts: 3	Re: Problem running GA branch Reply #2 - Jul 30^th, 2010 at 10:51am Thanks Sergei, another question: can I ran GA-branch from the GUI or do I have to run it from the command line? Bye, prm42
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Sergei YaBB Administrator Offline Datamonkeys are forever... Posts: 1658 UCSD Gender:	Re: Problem running GA branch Reply #3 - Jul 30^th, 2010 at 10:54am Hi prm42, Only the command line at the moment, as the GUI version does not properly support MPI. Sergei
Back to top	Associate Professor Division of Infectious Diseases Division of Biomedical Informatics School of Medicine University of California San Diego WWW IP Logged

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