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Using HyPhy with BioPerl (Read 3503 times)
Daisie Huang
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Curious HyPhy user

Posts: 3
Using HyPhy with BioPerl
Sep 10th, 2012 at 12:31pm
Hi all,

I don't know if anyone uses HyPhy with BioPerl, but I've recently added some functionality to that package to allow you to programatically call a custom batch file using BioPerl. This way you can call your batch files with alignments and trees that are the results of previous BioPerl analyses or inputs.

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Datamonkeys are forever...

Posts: 1658
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Re: Using HyPhy with BioPerl
Reply #1 - Sep 11th, 2012 at 11:06am
Hi Daisie,

This is great. Thanks! We run a Python shop at UCSD, but reaching out to BioPerl community is an awesome feature. Let me know if there is anything we can do to smooth the integration.

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Associate Professor
Division of Infectious Diseases
Division of Biomedical Informatics
School of Medicine
University of California San Diego
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