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Partition Sequence Sites (Read 1612 times)
Nick1979
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Curious HyPhy user

Posts: 6
Houston
Gender: male
Partition Sequence Sites
Jun 12th, 2013 at 1:22pm
 
Hi

I have installed the linux version of Hyphy and I am having trouble doing the following analysis.

I have a pair of sequences and I want to see if the first, second, and third codon site evolve at the same rate. How will I partition my sequences into the three sites? and how to compute the likelihood of equal rate?

Thank you

Nicholas
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