Welcome, Guest. Please Login
YaBB - Yet another Bulletin Board
GARD and PARRIS via command line HyPhy (Read 2242 times)
YaBB Newbies

Curious HyPhy user

Posts: 2
GARD and PARRIS via command line HyPhy
Oct 22nd, 2013 at 1:00pm
Hi HyPhy users,

A quite simple question for which I cannot find an answer unfortunately:

Is it possible to run the GARD analysis then the PARRIS test via the command line version of HyPhy? And how to do so?

The command line version of HyPhy has been installed in the cluster we have at the university (Linux). I have found the TemplateBatchFiles directory within the cluster where GARD.bf and PARRIS.bf are but I am not sure what to do next...

What do I need to type in?
Is there any documentation about how to use this version of HyPhy??

Thanks in advance!

Back to top
IP Logged
YaBB Administrator

Datamonkeys are forever...

Posts: 1658
Gender: male
Re: GARD and PARRIS via command line HyPhy
Reply #1 - Oct 31st, 2013 at 3:22pm
Hi Maurice,

Try following the example on automating HyPhy analyses here Multimedia File Viewing and Clickable Links are available for Registered Members only!!  You need to Login Login

Back to top

Associate Professor
Division of Infectious Diseases
Division of Biomedical Informatics
School of Medicine
University of California San Diego
IP Logged