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Choosing GTR for compartmentalization analysis (Read 2520 times)

eunok

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Choosing GTR for compartmentalization analysis
Feb 2^nd, 2014 at 5:45am

Hi Sergie

I have small questions about choosing GTR as the substitution model when analysing compartmentalization using Fst.

I thought you need to choose Custom and enter 6 digit code, 012345, to choose GTR for Fst compartmentalization. Is this right?

What is the difference between GRM and GTR? (could you please recommend me some papers about GRM? Embarrassed

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-Eunok

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Sergei YaBB Administrator Offline Datamonkeys are forever... Posts: 1658 UCSD Gender:	Re: Choosing GTR for compartmentalization analysis Reply #1 - Feb 13^th, 2014 at 4:06pm Hi Eunok, GTR and GRM are the same thing: General Time Reversible vs General Reversible Model. Sorry for the confusion. Sergei
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