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Choosing GTR for compartmentalization analysis (Read 8026 times)
eunok
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Choosing GTR for compartmentalization analysis
Feb 2nd, 2014 at 5:45am
 
Hi Sergie

I have small questions about choosing GTR as the substitution model when analysing compartmentalization using Fst.

I thought you need to choose Custom and enter 6 digit code, 012345, to choose GTR for Fst compartmentalization. Is this right?


What is the difference between GRM and GTR?  (could you please recommend me some papers about GRM?  Embarrassed)


-Eunok

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Sergei
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Datamonkeys are forever...

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Re: Choosing GTR for compartmentalization analysis
Reply #1 - Feb 13th, 2014 at 4:06pm
 
Hi Eunok,

GTR and GRM are the same thing: General Time Reversible vs General Reversible Model. Sorry for the confusion.

Sergei
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