How to Discussion board on how to answer/test biological questions using HyPhy. Post your 'Can I do this?' or 'How do I do this?' questions here (Moderators: Sergei, Simon)

Topics: 324 Posts: 1378

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		Subject	Started By	Replies	Views	Last Post
		How to calculate absolute rate of dN and dS	Breaker01	1	2216	Nov 19th, 2013 at 4:38pm By: Breaker01
		GARD for analyze multiple data files	Miguel	6	5190	Nov 12th, 2013 at 1:28am By: Zhuofei
		GARD and PARRIS via command line HyPhy	Maurice	1	2315	Oct 31st, 2013 at 3:22pm By: Sergei
		Return branches with sites with FUBAR	JorgeT	1	2105	Oct 31st, 2013 at 3:18pm By: Sergei
		Test for branch specific selection	Asutu	4	4696	Oct 31st, 2013 at 3:06pm By: Sergei
		Optimisation issue	Miguel Lacerda	1	2186	Oct 9th, 2013 at 11:44am By: Sergei
		Bayesian network analysis on large dataset	Catherine Macken	5	4641	Oct 1st, 2013 at 9:26pm By: daven
		Can I run hyphy on my dataset?	RTuteja	1	1921	Sep 25th, 2013 at 11:16am By: Sergei
		positive selection test for organism with GC->AT mutation bias	Pär	5	4835	Sep 18th, 2013 at 12:14am By: Pär
		Sliding windows to show individual codons under selection	DanniUEA	1	1920	Sep 11th, 2013 at 10:47am By: Sergei
		Calculating dN/dS for codon positions with an alignment	O_evo	1	4088	Sep 6th, 2013 at 11:39am By: Sergei
		F_st compartmentalization permutation result	eunok	4	3882	Aug 29th, 2013 at 3:56am By: eunok
		MEME for a single branch	as	5	4767	Aug 16th, 2013 at 10:34am By: Sergei
		simulation questions	jrm	3	2912	Aug 12th, 2013 at 4:46pm By: Sergei
		purifying selection branch-site REL	antdrew	1	2096	Aug 7th, 2013 at 1:36pm By: Sergei
		MPI environment in Windows	Dorota Paczesniak	1	2161	Jul 23rd, 2013 at 4:05pm By: Sergei
		poor performance with likelihood partitions	JDB	2	2172	Jul 18th, 2013 at 8:54am By: JDB
		initial parameter guesses	JDB	0	1435	Jul 16th, 2013 at 9:56am By: JDB
		Testing molecular clock	Nick1979	1	2010	Jul 14th, 2013 at 11:15am By: Nick1979
		date stamp sequences?	JDB	4	3310	Jul 12th, 2013 at 8:56am By: JDB

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