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Running Spidermonkey/BGM locally (Read 2973 times)
Sarah
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Running Spidermonkey/BGM locally
Apr 27th, 2009 at 1:14pm  
Is it possible to perform Spidermonkey locally? I naively tried to run TemplateBatchFiles/BGM.bf, as I couldn't find a clear option in the GUI menu.

Thanks again,
Sarah
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Sergei
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Re: Running Spidermonkey/BGM locally
Reply #1 - Apr 27th, 2009 at 4:41pm  
Dear Sarah,

BGM is available as an option under QuickSelectionDetection.bf (not the most logical place for sure!). Follow the same option path as you would for SLAC, but select BGM co-evolution in the 'Ancestor Counting Options' menu and then follow the prompts.

HTH,
Sergei
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Sarah
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Re: Running Spidermonkey/BGM locally
Reply #2 - Apr 29th, 2009 at 10:34am  
Ah, hadn't looked there. Thanks!
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Art Poon
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Re: Running Spidermonkey/BGM locally
Reply #3 - May 5th, 2009 at 9:29pm  
Hi Sarah,

I'm hoping to integrate BGMs into HyPhy in a more user-accessible fashion, so we would really benefit from your feedback about your end-user experience!  For example, where you'd intuitively expect to find BGM methods.  Smiley

- Art.
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