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Prime user tree option (Read 6511 times)
matias
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Prime user tree option
Jul 24th, 2013 at 12:13pm
 
Hello,

I want to run the PRIME analysis with the "user defined" tree option, but the analysis generates an output using a NJ tree. Other analyses run fine with the same file (e.g. MEME). Any idea?

thanks
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Sergei
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Datamonkeys are forever...

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Re: Prime user tree option
Reply #1 - Jul 24th, 2013 at 12:16pm
 
Hi Matias,

That could be a bug in Datamonkey code. I presume you selected the User tree option on the PRIME analysis setup page?

Sergei
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matias
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Re: Prime user tree option
Reply #2 - Jul 24th, 2013 at 12:32pm
 
Yes I selectd that.
Thanks for your response I and will wait for more info about that bug.
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Sergei
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Datamonkeys are forever...

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UCSD
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Re: Prime user tree option
Reply #3 - Jul 24th, 2013 at 3:00pm
 
Hi Matias,

The analyses were using User Trees; the bug was in the script that listed the tree option in the queueing page. This has now been fixed.

Sergei
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Associate Professor
Division of Infectious Diseases
Division of Biomedical Informatics
School of Medicine
University of California San Diego
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