How to Discussion board on how to answer/test biological questions using HyPhy. Post your 'Can I do this?' or 'How do I do this?' questions here (Moderators: Sergei, Simon)

Topics: 324 Posts: 1378

Pages: 1 ... 8 9 10 11 12 ... 17

		Subject	Started By	Replies	Views	Last Post
		Likelihood computation	Miguel Lacerda	11	4684	Nov 24th, 2008 at 7:35am By: Sergei
		How to use CompareSelectivePressureVL.bf properly	ben	3	1775	Nov 13th, 2008 at 10:03am By: Sergei
		Multiple Substitution Matrices along a Phylogeny	Miguel Lacerda	2	2311	Oct 21st, 2008 at 1:49am By: Miguel Lacerda
		MPI version for Mac OS X?	Jeremy	4	2110	Oct 10th, 2008 at 3:30am By: Sergei
		load a tree from an input tree file	Miguel	2	1567	Oct 4th, 2008 at 4:25pm By: Miguel
		rerooting trees in batch files	Miguel	10	6327	Oct 4th, 2008 at 4:20pm By: Miguel
		synRate and dS	Sung	1	1285	Sep 19th, 2008 at 1:19am By: Sergei
		saving site-by-site likelihoods	Ellen Cocquyt	3	2189	Sep 8th, 2008 at 1:54pm By: Sergei
		BatchFile for estimate dN/dS per site	Miguel	3	1670	Sep 8th, 2008 at 11:28am By: Sergei
		testing positive selction with InDels	hanan	0	995	Aug 31st, 2008 at 10:02pm By: hanan
		Could Datamonkey run Branch-site model like PAML?	Sundy	3	1975	Aug 27th, 2008 at 7:39pm By: Sundy
		Including Codon Models in batch files	Ricardo Tiburcio	6	2941	Aug 20th, 2008 at 1:33pm By: Sergei
		ancestral sequence reconstruction for many sets « Pages 1 2 »	Miguel	21	8854	Aug 17th, 2008 at 9:08pm By: Miguel
		Site heterogeneity in equilibrium frequencies	Miguel Lacerda	2	2360	Jul 28th, 2008 at 8:48am By: Miguel Lacerda
		Specifying nonreversible rate matrices	Aidan Budd	0	1579	Jul 21st, 2008 at 7:58am By: Aidan Budd
		recover ancestral sequence from web?	Rafe	1	1411	Jun 18th, 2008 at 12:34pm By: Sergei
		batch code for T92 model	weli	3	2595	Jun 4th, 2008 at 3:53pm By: weli
		Read tree from external file	NP	4	2109	May 15th, 2008 at 11:18am By: NP
		Equilibrium Frequencies with branch-specific model	Aidan Budd	1	1179	May 15th, 2008 at 10:16am By: Sergei
		6 character model designation	aculasso	2	3598	Apr 29th, 2008 at 11:25am By: aculasso

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