How to Discussion board on how to answer/test biological questions using HyPhy. Post your 'Can I do this?' or 'How do I do this?' questions here (Moderators: Sergei, Simon)

Topics: 324 Posts: 1378

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		Subject	Started By	Replies	Views	Last Post
		GA branch analysis	phylo	1	1555	May 29th, 2009 at 10:56am By: wayne
		Non-reversible, branch length scaling	sn	0	1040	May 29th, 2009 at 9:36am By: sn
		Detecting selection in REL v. FEL	Sarah	4	3100	May 20th, 2009 at 12:12pm By: Sarah
		GARD on desktop	phylo	2	6632	May 19th, 2009 at 8:34am By: phylo
		use user-defined branch lengths for analyses	Seraina	9	4278	May 8th, 2009 at 8:17am By: Seraina
		Hypothesis testing with REL (dNdSRateAnalysis.bf)	Sarah	1	1171	Apr 23rd, 2009 at 11:42am By: Sergei
		non-reversible models	weli	4	3229	Apr 20th, 2009 at 3:13pm By: wayne
		profile likelihood inflation factor	Danny	2	2228	Apr 13th, 2009 at 12:10pm By: Sergei
		setting constraints	Rachel	4	2428	Mar 20th, 2009 at 5:36pm By: Rachel
		batch file for REL of Datamonkey	Miguel	2	2104	Mar 20th, 2009 at 2:24am By: Miguel
		accelerated sub rate in a particular lineage	Rachel	11	4455	Mar 12th, 2009 at 6:24pm By: Sergei
		COT batch file	Miguel	1	1478	Mar 9th, 2009 at 10:56am By: Sergei
		Directional selection	phylo	1	1438	Mar 2nd, 2009 at 12:17pm By: Sergei
		dNdS	blue	4	2738	Feb 19th, 2009 at 1:23am By: blue
		Correcting for Numerical Underflow	Miguel Lacerda	3	1970	Feb 17th, 2009 at 9:23am By: Sergei
		Dual Model	Miguel Lacerda	3	2106	Feb 12th, 2009 at 2:32pm By: Sergei
		Statistics/info print outs	jh26	3	2524	Jan 25th, 2009 at 5:34pm By: Sergei
		Co-evolution Detection Using Distance Matrices	Andrew_Roth	2	2212	Jan 13th, 2009 at 7:21am By: kevintz
		molecular clock deviation	raja	2	2569	Jan 6th, 2009 at 3:30am By: raja
		building likelihood function	gustavo	7	3421	Jan 5th, 2009 at 6:37pm By: Sergei

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